A Random Batch Ewald Method for Charged Particles in the Isothermal-Isobaric Ensemble

نویسندگان

چکیده

We develop an accurate, highly efficient and scalable random batch Ewald (RBE) method to conduct simulations in the isothermal-isobaric ensemble (the NPT ensemble) for charged particles a periodic box. After discretizing Langevin equations of motion derived using suitable Lagrangians, RBE builds mini-batch strategy into Fourier space summation pressure forces so computational cost is reduced from $\mathcal{O}(N^2)$ $\mathcal{O}(N)$ per time step. implement LAMMPS package report accurate simulation results both dynamical quantities statistics equilibrium typical systems including all-atom bulk water semi-isotropic membrane system. Numerical on massive supercomputing cluster are also performed show promising CPU efficiency RBE.

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ژورنال

عنوان ژورنال: Social Science Research Network

سال: 2021

ISSN: ['1556-5068']

DOI: https://doi.org/10.2139/ssrn.3973411